Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919171.1_cds_XP_016468418.1_61055
CDS Infomation

[gene=LOC107790961] [db_xref=GeneID:107790961] [protein=lysine-specific demethylase JMJ25-like isoform X2] [protein_id=XP_016468418.1] [location=complement(join(10244..10309,11583..11633,14958..15043,15147..15219,16269..16528,16621..16798,17098..17520,18563..19516))] [gbkey=CDS]
Sequence

ATGGTTGAAAATGGTGATATGGAACATGATTCTGTACCAGATACCAATACTAAAACTTCA
AGAAGGACTAGACTTTCTGAGAAGGAGATGGTTGAAAATGGTGATACGGAACATGGTTCT
GTACCAGATAACAAAACTAGAACTTCAAGAAGGACTAGACTTTCCAAGAAGCAGATGGTT
GAAAATGGTGACACGAAACATGATTCTGTGCCAGATACCAATACTGGAACTTCAAGAAGG
ACTAGACTTTCCAAGAAGGAAACGGTTGAAAATGGTGCTATGGAACGTGATTCTGTATCA
GATACCAATACTAGAACTTCAAGAAGGACTAGACTTTCGAAGAAGGAGATTGTTGAAAAT
GATTCCGCTGGAGATGCCAAGTTTGCATCTGAAATGAAACCTAGGGATAATGGAGGGCTT
CTGCCAAAGAATTCTGGTGGTCCTGCTGGTGAATGGAAGTCCAATGAAGCTGGTAGCATC
CCTTGTCCGCCAGAGAATTTTGGTGGATTTGGTAAGGGCATTTTAGAGCTGAAGCGCCTG
CGGTCAAAGTCAAAATATTCGGTCTCTGAATTGTTGACAAAGGCTGAAGATATTGTCAAA
AGATGTGAATTGGAACACATGCCTGCAATACCTGAGGGGTCATGCTTATGTATAAATTTA
GTTGCTGAAAATGATATGCAGAAAAGTAAATTGCGTAAAGCATCATCTCGTGATGATTCT
GATGACAACTATTTATACTGTCCAGCAGCTAAAGATCTTCAGCAGGAGGATCTGAAGCAT
TTCCAGTGTCATTGGCTGAAAGGTGAGCCTGTCATCGTCGGTAATGTGCTTGAGACTGCG
TCAGGGTTAAGCTGGGAGCCCATGGTTATGTGGCAAGCGTGTCGCCAGTTAAAGAACCTA
AACCATCCCCTTCTTTTGGATGTCAGTGCTACCAAATGCTTGGATTGGTCTGAGGCAGAA
GTTAACATCCACCACTTTTTTAAGGGATACATGGAAGGTCAATTTGATAGTGCTGGCTGG
CCACAGCTTTTGAAGTTGCAAGGCTGGCCTAATTTTTTCGAAGAGCGGTCACCCCACCTT
TGTGCTGAGTTCATTAGAAGCTTGCCTTTTAAGGAGTACACAGATCCTCAAAGTGGCTTC
CTAAATCTTGCTGTCAAACTGCCACCAGGGTCTTTGAGACCTGACATTGGAGCAAAGACA
TATATCGCTTATGGAATTCCCCAGGAGCTGGGGCGTGGAGACTCTGTGACTAAGCTGCAC
TGTGATATGTCTGATGCGGTATACTTGGTTGCCTTTTCTTTTGGGCATATTTTTCTTCTC
TCTGGACTCTGGATTATGCCCAGTGAAGATTTTTCTGGAGCACGTGGACATACTCATGTG
AATGTGCTGACACATACTCAAGGAATAAAGCTGACACCTGTGCAGCTTTCAAGGATAGAA
ATATTGAAAAGAACATATGCTGCCCAAGATAAAAGGGAACTTCAAATGGCTGATGAGGAG
CAAAAATGTAAAAATGGAGCATCATCTGAGTTCAACGAGGGCCAGTCTTTGCTAGAGAGA
GATACTGCTGCTGAGGGGATAACAAATGGTGCAATCCATTTTACTGGCGCTTCTGAAGCA
AGTGGAGGGATTAAGAATGATTGTAACATTGATGCGTGCAAAGGTAACCCAGTGTTTGGG
AAAAGTGAAATATCTGAGGATATAGGAGGTGCGATGTGGGGCATCTTTAGAAGGCAAGAT
GTTCCGAAGTTAGAGGAATATCTCAGGAAGCACTTCAATGAATTCAGGCACATTAACTGC
TGCCCTGTGCCACAGGTTATTCACCCTATTCATGATCAAACATTTTACTTGACTGAGGAC
CATAAAAGGAAGCTTAAGGAAAAATATGGATTTGAACCTTGGACCTTTGTTCAAAAACTA
GGGGATGCAGTTTTCATACCTGCAGGCTGCCCTTATCAAGTTAGAAATCTGAAGGAAGTC
CGCTTGCTTTCCCAAGATCTTGTTGCTGCAGAAGACAAATTAGAGGTCAAAAAGATGATT
CTTTATGCCACATGGGAAGCTATTGAGGACCTGGCAATGCTAAGTCAGTGA

Peptide Sequence

PEP ID

XP_016468418.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ25-like isoform X2 [Nicotiana tabacum]
Sequence

MVENGDMEHDSVPDTNTKTSRRTRLSEKEMVENGDTEHGSVPDNKTRTSRRTRLSKKQMV
ENGDTKHDSVPDTNTGTSRRTRLSKKETVENGAMERDSVSDTNTRTSRRTRLSKKEIVEN
DSAGDAKFASEMKPRDNGGLLPKNSGGPAGEWKSNEAGSIPCPPENFGGFGKGILELKRL
RSKSKYSVSELLTKAEDIVKRCELEHMPAIPEGSCLCINLVAENDMQKSKLRKASSRDDS
DDNYLYCPAAKDLQQEDLKHFQCHWLKGEPVIVGNVLETASGLSWEPMVMWQACRQLKNL
NHPLLLDVSATKCLDWSEAEVNIHHFFKGYMEGQFDSAGWPQLLKLQGWPNFFEERSPHL
CAEFIRSLPFKEYTDPQSGFLNLAVKLPPGSLRPDIGAKTYIAYGIPQELGRGDSVTKLH
CDMSDAVYLVAFSFGHIFLLSGLWIMPSEDFSGARGHTHVNVLTHTQGIKLTPVQLSRIE
ILKRTYAAQDKRELQMADEEQKCKNGASSEFNEGQSLLERDTAAEGITNGAIHFTGASEA
SGGIKNDCNIDACKGNPVFGKSEISEDIGGAMWGIFRRQDVPKLEEYLRKHFNEFRHINC
CPVPQVIHPIHDQTFYLTEDHKRKLKEKYGFEPWTFVQKLGDAVFIPAGCPYQVRNLKEV
RLLSQDLVAAEDKLEVKKMILYATWEAIEDLAMLSQ

Transcript Sequence

Gene sequence data has not been registered.